Downloads
DECIPHER is a software that can be used to maintain, analyze, and decipher large amounts of DNA sequence data. DECIPHER is designed to complement other tools that are part of BioConductor, a suite of packages for the R programming language.Installation
To install DECIPHER, start the latest version of R and enter:Resources
Package source: | DECIPHER_3.0.0.tar.gz |
Mac OS X binary: | DECIPHER_3.0.0.tgz |
DECIPHER_arm_3.0.0.tgz | |
Windows binary: | DECIPHER_3.0.0.zip |
Alignment Benchmarks: | HOMSTRAD-mod.tar.gz (448 MB) |
PREFAB-mod.tar.gz (359 MB) | |
RNAconTest_v1.tar.gz (226 MB) | |
Training sets for organismal classification (nucleotides): | |
Contax v1 (unmodified) (26 MB) | |
GTDB r220 (modified) (80 MB) | |
RDP v18 (unmodified) (20 MB) | |
RDP v18 (modified) (18 MB) | |
SILVA SSU r138 (modified) (151 MB) | |
Warcup v2 (unmodified) (7 MB) | |
UNITE 2023 (unmodified) (126 MB) | |
Fungal LSU v11 (unmodified) (12 MB) | |
PR2 18S v4.13 (150 MB) | |
Training sets for functional classification (proteins): | |
KEGG Actinobacteria (441 MB) | |
KEGG Alphaproteobacteria (380 MB) | |
KEGG Animals (1.3 GB) | |
KEGG Archaea (130 MB) | |
KEGG Bacteroidota (229 MB) | |
KEGG Firmicutes (481 MB) | |
KEGG Gammaproteobacteria (440 MB) | |
KEGG Bacteria [other] (348 MB) | |
KEGG Eukarya [other] (438 MB) | |
KEGG Plants (323 MB) | |
KEGG Proteobacteria [other] (388 MB) |